Ugene
Curated by SignalDeveloper of integrated bioinformatics tools
Overview
UGENE is free open-source cross-platform bioinformatics software. It can be used for creating, editing and annotating nucleic acid and protein sequences, search in a sequence, multiple sequence alignment, PCR in silico, search through online databases such as NCBI, PDB, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, DAS servers, local and NCBI Genbank BLAST search, plasmid construction and annotation, cloning in silico by designing of cloning vectors, genome mapping short reads, raw NGS data processing, visualization of next generation sequencing data, variant calling, RNA-seq data analysis ,ChIP-seq data, SPAdes de novo assembler, search for transcription factor binding sites, search for direct, inverted and tandem repeats in DNA sequences, local sequence, protein secondary structure prediction with GOR IV and PSIPRED algorithms, constructing dotplots for nucleic acid sequences, creating and using a shared storage, search for complex signals etc. It also has 3D Structure viewer for files in PDB and MMDB formats, anaglyph view support, open reading frames finder, restriction enzyme finder, integrated primer3 package for PCR primer design, HMMER2 and HMMER3 packages integration and chromatogram viewer.
Key facts
- Founded
- 1999
- Headquarters
- Novosibirsk, Russia
- Stage
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- Industry
- Life Sciences Technology
Contact
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